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Ascochyta rabiei genome assembly version 2

This item is harvested.

Definition

The online data set (Ascochyta rabiei genome assembly) is available at the NCBI Genome Database. The data set includes the full version 2 genome assembly for Australian reference isolate ME14 with links to annotation files, cDNA sequence and protein amino-acid sequence files. The version 2 assembly was constructed based on the PacBio and Illumina sequence data with correction and re-assembly of fragmented contigs from the version 1 assembly (described in DOI: 10.1534/g3.120.401265) using Oxford Nanopore sequencing. Improved gene calling and annotation was informed by RNA sequencing data generated within the project. CUR00023

Temporal and Spatial Information

Dataset coverage starts
Dataset coverage ends

Data source details

Release Date
Spatial dimension
Western Australia
Contact Point
ccdmadmin@curtin.edu.au;request.data@grdc.com.au
Rights
Publicly available
License
Attribution 4.0 International

Custom Fields

Contributing organisations

Curtin University
Role: Owner
ROR: Curtin University ROR

Grains Research and Development Corporation
Role: Owner
ROR: Grains Research and Development Corporation ROR

Curtin University
Role: Manager
ROR: Curtin University ROR


Contributing people

Robert Lee
Role: Principal Investigator
ORCID iD: 0000-0002-4174-7042

Fredrick Mobegi
Role: Associated
ORCID iD: 0000-0003-0554-9919

Hediyeh Tahghighi
Role: Associated
ORCID iD: 0000-0001-8319-6579

Johannes Debler
Role: Associated
ORCID iD: 0000-0002-3604-051X

Lars Kamphuis
Role: Associated
ORCID iD: 0000-0002-3604-051X


Licence type

CC-BY

Attribution 4.0 International
Access rights type

Rights - Open

Publicly available
Related GRDC investments

  • CUR00023 - CCDM - Centre for Crop and Disease management
    GRDC Contract Code: CUR1403-002BLX
    Relationship: Output
Related publications

  • Reference Genome Assembly for Australian Ascochyta rabiei Isolate ArME14
    DOI: 10.1534/g3.120.401265
    Relationship: Is supported by
Keywords

  • Ascochyta
  • chickpea
  • plant pathogen
  • population genetics
Fields of Research (FoR) codes

  • 310805 - 310805 (unable to view classification)
Spatial coverage type
 Other