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Data Catalogue

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Definition

Reference genomes for Parastagonospora nodorum Australian reference genome (isolate SN15): Parastagonospora nodorum / P. avenaria pan-genome: Parastagonospora nodorum transcriptome of Pf-2 KO mutant: Pyrenophora teres f. teres/maculata reference genomes: Pyrenophora teres f. teres pan-genome; Pyrenophora teres f. teres transcriptome: Pyrenophora tritici-repentis Australian reference genome (isolate M4) and pan-genome: Pyrenophora tritici-repentis transcriptome: CUR00023-phaseII-F1

Temporal and Spatial Information

Dataset coverage starts
Dataset coverage ends

Data source details

Release Date
Spatial dimension
Western Australia
Contact Point
ccdmadmin@curtin.edu.au;request.data@grdc.com.au
Rights
available in public domain from genbank with no restrictions
License
Open

Custom Fields

Contributing organisations

Curtin University
Role: Owner
ROR: Curtin University ROR

Grains Research and Development Corporation
Role: Owner
ROR: Grains Research and Development Corporation ROR

Curtin University
Role: Manager
ROR: Curtin University ROR


Contributing people

James Hane
Role: Principal Investigator
ORCID iD: 0000-0002-7651-0977
Scopus Author ID: 14025522900
Researcher ID: A-7062-2011

Darcy Jones
Role: Principal Investigator
ORCID iD: 0000-0002-6459-6259
Scopus Author ID: 57194045867

Paula Moolhuijzen
Role: Principal Investigator
ORCID iD: 0000-0002-3502-7612
Scopus Author ID: 14525407700
Researcher ID: AFU-3963-2022

Huyen Phan
Role: Principal Investigator
ORCID iD: 0000-0002-8971-2308
Scopus Author ID: 56719262700

Simon Ellwood
Role: Principal Investigator
ORCID iD: 0000-0002-2673-0816
Scopus Author ID: 12766441100

Richard Oliver
Role: Principal Investigator
ORCID iD: 0000-0001-7290-4154
Scopus Author ID: 7401914527
Researcher ID: D-1166-2009

Kar-Chun Tan
Role: Principal Investigator
ORCID iD: 0000-0001-6094-823X
Scopus Author ID: 7403999337
Researcher ID: AAQ-4674-2021

Pao-Theen See
Role: Principal Investigator
ORCID iD: 0000-0001-6554-4146
Scopus Author ID: 56231274400

Caroline Moffat
Role: Principal Investigator
ORCID iD: 0000-0002-6360-1933
Scopus Author ID: 25936541300
Researcher ID: I-1058-2014


Licence type

Other

Open

Access rights type

Rights - Open

available in public domain from genbank with no restrictions

open source

Related GRDC investments

  • CUR00023 - CCDM - Centre for Crop and Disease management
    GRDC Contract Code: CUR1403-002BLX
    Relationship: Output

Related publications

  • Chromosome-level genome assembly and manually-curated proteome of model necrotroph Parastagonospora nodorum Sn15 reveals a genome-wide trove of candidate effector homologs, and redundancy of virulence-related functions within an accessory chromosome
    DOI: 10.1186/s12864-021-07699-8
    Relationship: Is documented by

  • Pan-Parastagonospora Comparative Genome Analysis—Effector Prediction and Genome Evolution
    DOI: 10.1093/gbe/evy192
    Relationship: Is documented by

  • Comprehensive Annotation of the Parastagonospora nodorum Reference Genome Using Next-Generation Genomics, Transcriptomics and Proteogenomics
    DOI: 10.1371/journal.pone.0147221
    Relationship: Is documented by

  • A specific fungal transcription factor controls effector gene expression and orchestrates the establishment of the necrotrophic pathogen lifestyle on wheat
    DOI: 10.1038/s41598-019-52444-7
    Relationship: Is documented by

  • Resequencing and Comparative Genomics of Stagonospora nodorum: Sectional Gene Absence and Effector Discovery
    DOI: 10.1534/g3.112.004994
    Relationship: Is documented by

  • Transcriptome analysis of Stagonospora nodorum: gene models, effectors, metabolism and pantothenate dispensability
    DOI: 10.1111/j.1364-3703.2011.00770.x
    Relationship: Is documented by

  • Dothideomycete–Plant Interactions Illuminated by Genome Sequencing and EST Analysis of the Wheat Pathogen Stagonospora nodorum
    DOI: 10.1105/tpc.107.052829
    Relationship: Is documented by

  • A global pangenome for the wheat fungal pathogen Pyrenophora tritici-repentis and prediction of effector protein structural homology
    DOI: 10.1099/mgen.0.000872
    Relationship: Is documented by

  • The first genome assembly of fungal pathogen Pyrenophora tritici-repentis race 1 isolate using Oxford Nanopore MinION sequencing
    DOI: 10.1186/s13104-021-05751-0
    Relationship: Is documented by

  • PacBio genome sequencing reveals new insights into the genomic organisation of the multi-copy ToxB gene of the wheat fungal pathogen Pyrenophora tritici-repentis
    DOI: 10.1186/s12864-020-07029-4
    Relationship: Is documented by

  • A new PacBio genome sequence of an Australian Pyrenophora tritici-repentis race 1 isolate
    DOI: 10.1186/s13104-019-4681-6
    Relationship: Is documented by

  • A first genome assembly of the barley fungal pathogen Pyrenophora teres f. teres
    DOI: 10.1186/gb-2010-11-11-r109
    Relationship: Is documented by

  • Expansion and Conservation of Biosynthetic Gene Clusters in Pathogenic Pyrenophora spp.
    DOI: 10.3390/toxins12040242
    Relationship: Is documented by

  • Transposable Element Genomic Fissuring in Pyrenophora teres Is Associated With Genome Expansion and Dynamics of Host-Pathogen Genetic Interactions
    DOI: 10.3389/fgene.2018.00130
    Relationship: Is documented by

Keywords

  • bioinformatics
  • fungal plant-pathogens
  • fungal phytopathogens
  • plant-pathogenic fungi
  • plant pathology
  • effectors
  • transcriptome
  • pan-genome
  • genome

Fields of Research (FoR) codes

  • 310805 - 310805 (unable to view classification)
  • 300409 - 300409 (unable to view classification)
  • 310204 - 310204 (unable to view classification)

Spatial coverage type
Other

Related content

Relation Count
As a child of a Data Set 0